# Items where Division is "College of Engineering & Physical Sciences > Systems analytics research institute (SARI)" and Year is 2008

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**61**.

## Article

Alamino, Roberto C. and Caticha, Nestor
(2008).
Bayesian online algorithms for learning in discrete Hidden Markov Models.
*Discrete and Dontinuous Dynamical Systems: Series B*, 9
(1),
pp. 1-10.

Alamino, Roberto C. and Saad, David
(2008).
Typical kernel size and number of sparse random matrices over Galois fields: a statistical physics approach.
*Physical Review E*, 77
(6),
pp. 1-12.

Andrle, Miroslav and Rebollo-neira, Laura
(2008).
From cardinal spline wavelet bases to highly coherent dictionaries.
*Journal of Physics A: Mathematical and Theoretical*, 41
(17),

Ania-Castañón, Juan D., Karalekas, Vassileios, Harper, Paul and Turitsyn, Sergei
(2008).
Simultaneous spatial and spectral transparency in ultralong fiber lasers.
*Physical Review Letters*, 101
(12),

Ania-Castañón, Juan D. and Turitsyn, Sergei
(2008).
Unrepeatered transmission through ultra-long fiber laser cavities.
*Optics Communications*, 281
(23),
5760–5763.

Babin, S.A., Karalekas, V., Podivilov, E.V., Mezentsev, Vladimir, Harper, Paul, Ania-Castañón, Juan D. and Turitsyn, Sergei K.
(2008).
Turbulent broadening of optical spectra in ultralong Raman fiber lasers.
*Physical Review A*, 77
(3),
033803.

Boscolo, Sonia A., Latkin, Anton I. and Turitsyn, Sergei K.
(2008).
Passive nonlinear pulse shaping in normally dispersive fiber systems.
*IEEE Journal of Quantum Electronics*, 44
(12),
pp. 1196-1203.

Boscolo, Sonia, Turitsyn, Sergei and Blow, Keith
(2008).
Nonlinear loop mirror-based all-optical signal processing in fiber-optic communications.
*Optical Fiber Technology*, 14
(4),
pp. 299-316.

Busse, F.H.
(2008).
Asymptotic theory of wall-attached convection in a horizontal fluid layer with a vertical magnetic field.
*Physics of Fluids*, 20
(2),

Busse, F.H. and Simitev, R.D.
(2008).
Toroidal flux oscillation as possible cause of geomagnetic excursions and reversals.
*Physics of the Earth and Planetary Interiors*, 168
(3-4),
pp. 237-243.

Buts, V.A., Nerukh, A.G., Ruzhytska, N.N. and Nerukh, Dmitry
(2008).
Wave chaotic behaviour generated by linear systems.
*Optical and Quantum Electronics*, 40
(8),
pp. 587-601.

Chapko, R. and Johansson, B.T.
(2008).
An alternating potential based approach for a Cauchy problem for the Laplace equation in a planar domain with a cut.
*Computational Methods in Applied Mathematics*, 8
(4),
pp. 315-335.

D'Alimonte, Davide and Cornford, Dan
(2008).
Outlier detection with partial information:Application to emergency mapping.
*Stochastic environmental research and risk assessment*, 22
(5),
pp. 613-620.

Derevyanko, Stanislav
(2008).
Design of a flat-top fiber Bragg filter via quasi-random modulation of the refractive index.
*Optics Letters*, 33
(20),
pp. 2404-2406.

Derevyanko, Stanislav
(2008).
The (n+1)/2 rule for dealiasing in the split-step Fourier methods for n-wave interactions.
*IEEE Photonics Technology Letters*, 20
(23),
pp. 1929-1931.

Derevyanko, Stanislav, Falkovich, Gregory and Turitsyn, Sergei
(2008).
Evolution of non-uniformly seeded warm clouds in idealized turbulent conditions.
*New Journal of Physics*, 10
,

Herzallah, Randa and Lowe, David
(2008).
A Bayesian perspective on stochastic neurocontrol.
*IEEE Transactions on Neural Networks and Learning Systems*, 19
(5),
pp. 914-924.

Ingram, Benjamin R., Cornford, Dan and Evans, David J.
(2008).
Fast algorithms for automatic mapping with space-limited covariance functions.
*Stochastic environmental research and risk assessment*, 22
(5),
pp. 661-670.

Jensen, Christian H., Nerukh, Dmitry and Glen, Robert C.
(2008).
Controlling protein molecular dynamics:how to accelerate folding while preserving the native state.
*Journal of Chemical Physics*, 129
(22),

Jensen, Christian H., Nerukh, Dmitry and Glen, Robert C.
(2008).
Sensitivity of peptide conformational dynamics on clustering of a classical molecular dynamics trajectory.
*Journal of Chemical Physics*, 128
(11),

Kovalev, A.S., Prilepsky, Jaroslaw E., Gredeskul, Sergey A. and Derevyanko, Stanislav
(2008).
Soliton transmission through a disordered system.
*Low Temperature Physics*, 34
(7),
pp. 559-563.

Lerner, Igor V., Yudson, Vladimir I. and Yurkevich, Igor
(2008).
Quantum wire hybridized with a single-level impurity.
*Physical Review Letters*, 100
(25),

Mallard, Etienne and Saad, David
(2008).
Inference by belief propagation in composite systems.
*Physical Review E*, 78
(2),
021107.

Nerukh, D.
(2008).
Computational mechanics reveals nanosecond time correlations in molecular dynamics of liquid systems.
*Chemical Physics Letters*, 457
(4-6),
pp. 439-443.

Nerukh, Dmitry, Ryabov, Vladimir and Glen, Robert C.
(2008).
Complex temporal patterns in molecular dynamics:a direct measure of the phase-space exploration by the trajectory at macroscopic time scales.
*Physical Review E*, 77
(3),

Nesterov, Maxim L., Kats, Alexandre V. and Turitsyn, Sergei K.
(2008).
Extremely short-length surface plasmon resonance devices.
*Optics Express*, 16
(25),
pp. 20227-20240.

Punckt, Christian, Stich, Michael, Beta, Carsten and Rotermund, Harm Hinrich
(2008).
Suppression of spatiotemporal chaos in the oscillatory CO oxidation on Pt(110) by focused laser light.
*Physical Review E*, 77
(4),

Sivaraksa, Mingmanas and Lowe, David
(2008).
Predictive gene lists for breast cancer prognosis: a topographic visualisation study.
*BMC Medical Genomics*, 1
(1),
pp. 1-8.

Stepanenko, Alexander S., Constantinou, Costas C., Yurkevich, Igor V. and Lerner, Igor V.
(2008).
Temporal correlations of local network losses.
*Physical Review E*, 77
(4),

Stich, Michael, Briones, Carlos and Manrubia, Susanna C.
(2008).
On the structural repertoire of pools of short, random RNA sequences.
*Journal of Theoretical Biology*, 252
(4),
pp. 750-763.

Sugihara-Seki, Masako, Akinaga, Takeshi and Itano, Tomoaki
(2008).
Flow across microvessel walls through the endothelial surface glycocalyx and the interendothelial cleft.
*Journal of Fluid Mechanics*, 601
,
pp. 229-252.

Turitsyn, Sergei K. and Derevyanko, Stanislav
(2008).
Soliton-based discriminator of noncoherent optical pulses.
*Physical Review A*, 78
(6),
063819.

Vuong, Ba-Quy, Hui, Siu C. and He, Yulan
(2008).
Progressive structural analysis for dynamic recognition of on-line handwritten mathematical expressions.
*Pattern Recognition Letters*, 29
(5),
pp. 647-655.

Wong, K.Y. Michael and Saad, David
(2008).
Minimizing unsatisfaction in colourful neighbourhoods.
*Journal of Physics A: Mathematical and General*, 41
(32),
p. 324023.

Yano, Toru, Tanaka, Toshiyuki and Saad, David
(2008).
A mean field theory of coded CDMA systems.
*Journal of Physics A: Mathematical and General*, 41
(32),
p. 324022.

Zhou, Deyu and He, Yulan
(2008).
Extracting interactions between proteins from the literature.
*Journal of Biomedical Informatics*, 41
(2),
pp. 393-407.

Zhou, Deyu, He, Yulan and Kwoh, Chee K.
(2008).
Extracting protein-protein interactions from MEDLINE using the hidden vector state model.
*International Journal of Bioinformatics Research and Applications*, 4
(1),
pp. 64-80.

## Book Section

Alamino, Roberto C. and Saad, David
(2008).
*Typical performance of generalised vector channels.*
IN: Proceedings of the 6th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2008.
DEU: IEEE.

Archambeau, Cédric, Opper, Manfred, Shen, Yuan, Cornford, Dan and Shawe-Taylor, John
(2008).
*Variational inference for diffusion processes.*
IN: Annual Conference on Neural Information Processing Systems 2007.
Platt, J.C.; Koller, D.; Singer, Y. and Roweis, S. (eds)
Advances In Neural Information Processing Systems
.
CAN: MIT.

Babin, Sergei A., Karalekas, Vassileios, Podivilov, E.V., Mezentsev, Vladimir K., Harper, Paul, Ania-Castañón, Juan D. and Turitsyn, Sergei K.
(2008).
*Characterization of ultra-long Raman fibre lasers.*
IN: Fiber lasers V.
Broeng, Jes and Headley, Clifford (eds)
USA: SPIE.

Cartland Glover, Gregory and Generalis, Sotos C.
(2008).
*Pattern competition in homogeneously heated fluid layers.*
IN: Eurotherm 2008.
Stoffels, G.M.M.; van der Meer, T.H. and van Steenhoven, A.A. (eds)
NLD: Eindhoven University of Technology.

Generalis, Sotos C. and Busse, Friedrich
(2008).
*Transition in inclined internally heated fluid layers.*
IN: Proceedings 5th European Thermal-Sciences Conference.
Stoffels, G.G.M.; van der Meer, T.H. and van Steenhoven, A.A. (eds)
Eindhoven (NL): Eindhoven University of Technology.

Generalis, Sotos C. and Fujimura, Kaoru
(2008).
*Range of validity of weakly non-linear theory in Rayleigh-Bénard convection.*
IN: Proceedings 5th European Thermal-Sciences Conference.
Stoffels, G.G.M.; van der Meer, T.H. and van Steenhoven, A.A. (eds)
Eindhoven (NL): Eindhoven University of Technology.

Goldingay, Harry and van Mourik, Jort
(2008).
*The influence of memory in a threshold model for distributed task assignment.*
IN: SASO '08: 2008 Second IEEE International Conference on Self-Adaptive and Self-Organizing Systems.
Washington (US): IEEE.

Goldsby, Heather J., Sawyer, Peter, Bencomo, Nelly, Hughes, Daniel and Cheng, Betty H.C.
(2008).
*Goal-based modeling of dynamically adaptive system requirements.*
IN: 15th Annual IEEE International Conference and Workshop on the Engineering of Computer Based Systems, 2008. ECBS 2008.
GBR: IEEE.

He, Yulan, Nakata, Keiichi and Zhou, Deyu
(2008).
*Ontology-based protein-protein interactions extraction from literature using the hidden vector state model.*
IN: 2008 IEEE international conference on data mining workshops.
ITA: IEEE.

Ingram, Benjamin R. and Cornford, Dan
(2008).
*Parallel geostatistics for sparse and dense datasets.*
IN: geoENV VII – Geostatistics for Environmental Applications.
Springer.

Krepper, Eckhard, Cartland-Glover, Gregory, Grahn, Alexander, Weiss, Frank-Peter, Alt, Sören, Hampel, Rainer, Kästner, Wolfgang and Seeliger, Andrè
(2008).
*CFD-modeling and Experiments of insulation debris transport phenomena in water flow.*
IN: Computational Fluid Dynamics (CFD) in Nuclear Reactor Safety (NRS).
FRA: Nuclear Energy Agency.

Lamichhane, Bishnu and Rebollo - Neira, Laura
(2008).
*Projection and interpolation based techniques for structured and impulsive noise filtering.*
IN: New Signal Processing Research.
Maeda, Takumi (ed.)
Nova science.

Lerner, Igor V., Yurkevich, Igor, Stepanenko, Alexander and Constantinou, Constantinos
(2008).
*Loss fluctuations and temporal correlations in network queues.*
IN: 6th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks and Workshops, 2008 (WiOPT 2008).
DEU: IEEE.

Nguyen, Hang T. and Nabney, Ian T.
(2008).
*Combining the wavelet transform and forecasting models to predict gas forward prices.*
IN: Seventh International Conference on Machine Learning and Applications, 2008. ICMLA '08.
IEEE.

Pebesma, Edzer J., Dubois, Gregoire and Cornford, Dan
(2008).
*The challenge of real-time automatic mapping for environmental monitoring network management.*
IN: geoENV VI – Geostatistics for Environmental Applications Proceedings of the Sixth European Conference on Geostatistics for Environmental Applications.
Springer.

Whittle, Jon, Sawyer, Peter, Bencomo, Nelly and Cheng, Betty
(2008).
*A language for self-adaptive system requirements.*
IN: International Workshop on Service-Oriented Computing: Consequences for Engineering Requirements, 2008. SOCCER '08.
ESP: IEEE.

Williams, Matthew, Cornford, Dan, Bastin, Lucy and Ingram, Ben
(2008).
*Describing and communicating uncertainty within the semantic web.*
IN: Proceedings of the Fourth International Workshop on Uncertainty Reasoning for the Semantic Web.
Bobillo, Fernando; da Costa, Paulo C.G. and et al (eds)
CEUR Workshop Proceedings
.
DNK: CEUR-WS.org.

Williams, Matthew, Cornford, Dan, Bastin, Lucy and Ingram, Benjamin R.
(2008).
*Exchanging uncertainty: interoperable geostatistics?*
IN: geoENV VII – Geostatistics for Environmental Applications.
Springer.

Wong, K.Y. Michael, Saad, David and Yeung, C.H.
(2008).
*Network optimisation - A statistical physics perspective.*
IN: Proceedings of the 6th International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2008.
DEU: IEEE.

Zhou, Deyu and He, Yulan
(2008).
*A hybrid generative/discriminative framework to train a semantic parser from an un-annotated corpus.*
IN: COLING '08.
Scott, Donia and Uszkoreit, Hans (eds)
Stroudsburg, PA (US): Association for Computational Linguistics.

## Monograph

Goldingay, Harry and van Mourik, Jort
(2008).
*Genetics and competing strategies in a threshold model for mail processing.*
Technical Report.
Aston University, Birmingham.

Schroeder, Martin, Nabney, Ian T. and Cornford, Dan
(2008).
*Block GTM: Incorporating prior knowledge of covariance structure in data visualisation.*
Technical Report.
Aston University, Birmingham.

Vrettas, Michail D., Shen, Yuan and Cornford, Dan
(2008).
*Derivations of variational gaussian process approximation framework.*
Technical Report.
Aston University, Birmingham.

## Conference or Workshop Item

Latkin, Anton I., Boscolo, Sonia, Bhamber, Ranjeet and Turitsyn, Sergei K.
(2008).
Optical signal copying by cross-phase modulation with triangular pulses.
IN: *3rd EPS-QEOD Europhoton Conference on Solid-state, Fiber and Waveguided Light Sources*. 2008-08-31 - 2008-09-05.