Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit

Rasakanthan, Janarthanan, Sugden, Kate and Tomlins, Peter H. (2011). Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit. Journal of Biomedical Optics, 16 (2),

Abstract

In Fourier domain optical coherence tomography (FD-OCT), a large amount of interference data needs to be resampled from the wavelength domain to the wavenumber domain prior to Fourier transformation. We present an approach to optimize this data processing, using a graphics processing unit (GPU) and parallel processing algorithms. We demonstrate an increased processing and rendering rate over that previously reported by using GPU paged memory to render data in the GPU rather than copying back to the CPU. This avoids unnecessary and slow data transfer, enabling a processing and display rate of well over 524,000 A-scan/s for a single frame. To the best of our knowledge this is the fastest processing demonstrated to date and the first time that FD-OCT processing and rendering has been demonstrated entirely on a GPU.

Publication DOI: https://doi.org/10.1117/1.3548153
Divisions: Engineering & Applied Sciences > Electrical, electronic & power engineering
Engineering & Applied Sciences > Institute of Photonics
Additional Information: Janarthanan Rasakanthan, Kate Sugden and Peter H. Tomlins, "Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit", J. Biomed. Opt. 16, 020505 (Feb 22, 2011); doi:10.1117/1.3548153 Copyright 2011 Society of Photo-Optical Instrumentation Engineers. One print or electronic copy may be made for personal use only. Systematic reproduction and distribution, duplication of any material in this paper for a fee or for commercial purposes, or modification of the content of the paper are prohibited.
Uncontrolled Keywords: medical image processing,optical tomography,Biomedical Engineering,Biomaterials,Electronic, Optical and Magnetic Materials,Atomic and Molecular Physics, and Optics
Full Text Link: http://spiedigi ... 6/i2/p020505_s1
Related URLs: http://www.scop ... tnerID=8YFLogxK (Scopus URL)
Published Date: 2011-02-22
Authors: Rasakanthan, Janarthanan
Sugden, Kate ( 0000-0001-6323-1082)
Tomlins, Peter H.

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